Scaffold Ga0102945_1000057

Overview

Basic Information

• Taxon OID: 3300007609
• Scaffold ID: Ga0102945_1000057
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43922
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (79.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009597	Metagenome / Metatranscriptome	315	Y
F032045	Metagenome / Metatranscriptome	181	Y
F041504	Metagenome / Metatranscriptome	160	Y
F055434	Metagenome / Metatranscriptome	138	Y
F060811	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102945_100005715	F060811	N/A	MLNNARANAMDYRDYAIEMVEDGIVDPMMMLTAALKYMSQDDVRDMLTANELDSRFEEEDA*
Ga0102945_100005719	F032045	N/A	MREYNEKAVEREIRKDPRIKGKEAKLIKALLKGRK*
Ga0102945_100005729	F055434	GAGG	MQYNKIFTNCAVVSDENFDLLTAEQLEAFTQAERAFVLVFLADTLANLTQVNADCAVENDNYFVRLADAQEVMQNLQMLYDTLDDSDDCTNIQFTLADAGAALCSYDTEYRECIAEQFEDACDNAAKLAKQTGNTNADYSTLAVRVLCSY*
Ga0102945_100005784	F009597	AGGAG	MKYAVMVCLDGKDDWIYVTENTDKCDMWNLKVQTFNDAQEAMTFAQTFQHPDKPENVMVVDYYED*
Ga0102945_10000579	F041504	AGG	MTTLLQHIESLNAKADLMMEQEPGLWMSKYTDDMSFWADMGVYTVEDFKRSQLIDGISDASKDLNGCRLRLNWDVMSMEELEDTYDSICSALNRQFEAEQEAEAYEAELRKGLSDNCEPLPYEEYADLEAV*