Scaffold Ga0102945

Basic Information
Taxon OID	3300007609 Open in IMG/M
Scaffold ID	Ga0102945_1000036 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	53169
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (54.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

53169

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (54.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4958	Long. (^o)	-122.1331	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

South San Francisco, USA

Coordinates

Lat. (^o)

37.4958

Long. (^o)

-122.1331

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002188	Metagenome / Metatranscriptome	585	Y
F003777	Metagenome / Metatranscriptome	469	Y
F005130	Metagenome / Metatranscriptome	411	Y
F007086	Metagenome / Metatranscriptome	358	Y
F018708	Metagenome / Metatranscriptome	233	Y
F055744	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102945_10000362	F007086	AGGA	MTKSRLLEIINEEITNVKWGMVNEEITSEDEKKIRDIIRTEVSAIFFDLFKKRKTWGA*
Ga0102945_100003620	F002188	GGA	MIKDLQKLLKQVHEPDEYQLTPHNMSHPLYWIWKIENGKMKDLDVKLRPFRNEHARFDIFINGQYILEKDYIFEQSGKDFHIKFIKANFVGAYDLQLTDDIKLEGDIDLV*
Ga0102945_100003621	F003777	GGAG	MSKVKPSIITPFNDKQRFKNLVNEVIEDSWIYTLVPESISLNQTLFTLNLINKKFVFEDIKVDNLSDYIDVYLMGVKKTSDMYVVTEVGNNIVITFTQSITLRPRDIVKTDFMVKGKIVSR*
Ga0102945_100003635	F055744	N/A	MVNYGNGFTWSEVYTMPIHWRKFYFKKLLDAKKKEKDEYDKQNRSSSSKGPGVRVRK*
Ga0102945_10000364	F005130	N/A	MAFSIQDYLANNKISTGTITQEVGDTPFKGGHNDIRKTNYEVKITEDGKLDLYTHKTVTTTK*
Ga0102945_100003646	F018708	N/A	MYNNATFVTKQQLKFLKEMDKWLSNEPWQSEVELEIAIQVRNMITEIENKGYYYEGEADLLNHMREEYIKHKKSIKKKRL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0102945_1000036

Overview

Ecosystem & Geography

Associated Families

Sequences