Scaffold Ga0102800_1072208

Overview

Basic Information

• Taxon OID: 3300007608
• Scaffold ID: Ga0102800_1072208
• Source Dataset Name: Marine microbial communities from the Southern Atlantic ocean - KN S19 Surf_B metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 682
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005533	Metagenome / Metatranscriptome	397	Y
F029129	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102800_10722082	F005533	GGAG	MSYTKNEVALETLISNINNQFYYIGEENDQVAPIDVKKFTEHCVAFIDSLEIEND*
Ga0102800_10722083	F029129	GGAG	MTNRTFIIEVKEDGKCKVNKYGDKLHSLIDDLGWEYQRMGVSGRETYDEICHLLGMIPEDEVYMEI*