Scaffold Ga0102800_1023209

Overview

Basic Information

• Taxon OID: 3300007608
• Scaffold ID: Ga0102800_1023209
• Source Dataset Name: Marine microbial communities from the Southern Atlantic ocean - KN S19 Surf_B metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1277
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F007756	Metagenome / Metatranscriptome	345	Y
F015105	Metagenome / Metatranscriptome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102800_10232093	F007756	AGGAGG	MNTLKRFYVNVKFEKYGTYTIEARSKEHALEIYNDGDYGWSDYSEDFGEFNEVVEDVEEEVFADTQLSLAGVF*
Ga0102800_10232094	F001026	GGGGG	MAIHTLKLDDLELTALITHLEGQSEMMVESRLNCSNPSEIPDREEVLLNMVYSKAFTIGWEADKNPKVDFNLIQNQDRIYKYK*
Ga0102800_10232095	F015105	AGGA	MNLEQRKANLIYEIASLINDDPLSAPILIEELVEVMFDEQIDQIEDVIVN