Scaffold Ga0102920_1040381

Overview

Basic Information

• Taxon OID: 3300007600
• Scaffold ID: Ga0102920_1040381
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1444
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2861
  • Long. (^o): -123.7318

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F025737	Metagenome / Metatranscriptome	200	Y
F088889	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102920_10403811	F000263	N/A	HLQRMVNAGVSGLDIIHGELKNLMLIWEKELEKAQEIEEESGEAMDSMERKYCEGFLDSLVALYNLTYQLSFQIGVREENKKDGH*
Ga0102920_10403813	F025737	GGA	MKPEDKDKLNECLKILDSTDLGLSLVWLWTWSTINNIFEDETYKQNCTIDEMWDHLCEAVEAGQGFSLEYGA*
Ga0102920_10403817	F088889	AGGCGG	MKTPEQKVAEQLVNLTEDHWFNAASLARYITDQPYYTTDRIMELVAQIIKWGGRRHEDELTP