Scaffold Ga0102802_1104065

Overview

Basic Information

• Taxon OID: 3300007596
• Scaffold ID: Ga0102802_1104065
• Source Dataset Name: Marine microbial communities from the Southern Atlantic ocean - KN S19 DCM_B metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 580
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003423	Metagenome / Metatranscriptome	487	Y
F074905	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102802_11040651	F003423	N/A	KQMRETIDRKDESIKKLEAELASYKDKEIDNVFSSLGLSTDKGFGKALKQVYDGPINTESIAQFAKDEYGYESTGQVQEVTQPAPEPIVQDDARERVAALDANSVSDVPLSQNEELAKALQSASVKDSLRARLAIMEQDKQNK*
Ga0102802_11040652	F074905	GGAGG	MAAITLTGDTLYSQKINNFTGELFRVGGQRTPFLSAT