Scaffold Ga0102918_1109263

Overview

Basic Information

• Taxon OID: 3300007593
• Scaffold ID: Ga0102918_1109263
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1563A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 824
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2103
  • Long. (^o): -123.7517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015209	Metagenome	256	N
F024112	Metagenome	207	Y
F056602	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102918_11092631	F024112	AGGA	MKIEDYDKERATVLNALYCSVRSAIEAENVHNNTRIEWIEDDFKVAKQKLETIEAEMRVL
Ga0102918_11092632	F015209	N/A	MNSYRRKALSLWSALLAEERWHKFESINCKPSCKGWNGWAPYCECFENHCTFVPKGEIEDMELVIVAKPIDDVLRNIQVIP*
Ga0102918_11092633	F056602	N/A	EVWEGKIMSNWTKGFIVVAITSQVFLFVILFGCKVGEGFYISGVDLVGMVLSSFCTLVYIPAILVSHDSDKIRKKLNEQLQA*