Scaffold Ga0102913_1002548

Overview

Basic Information

• Taxon OID: 3300007560
• Scaffold ID: Ga0102913_1002548
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1560A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6008
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2638
  • Long. (^o): -123.4649

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023805	Metagenome / Metatranscriptome	208	Y
F039124	Metagenome / Metatranscriptome	164	N
F041754	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102913_10025481	F039124	N/A	GFLCGIVCIVEMKTVSIIKDGAFMKSHSDYPVTNAQWVRMDNIVLWDYLTTLHLIDVDNSLVMFQGTLDIFYLRHRHNNDSVTKIDYNSDPWGRKFMINPSMYYCYVSCKIKIEVNIIVTTVNNMRVYCVDVIKDV*
Ga0102913_100254811	F023805	GAGG	MIKLKEILLENTAPNIFIPRRIEGRVERMIKTYIRNGNKGKLSLQDLNLTVLPEMLKDITVNGDFFCGNNHLTTLENCPKTV
Ga0102913_10025482	F041754	AGGA	MNHMKLNKILEKYHQTNNEWGLHTYNFGKSTSLGKRIGWMYNELMMNGRIDVIHNDILSSINELDSVTEYFIRNVITRDNFVGDDVYDRLKPYNADPWNREFLVYYGNVIHPEYYSVKNRDGWDKVFISVYFNNMVAKYSGMHITNESKVPLMILYSTSVNGLNIYCLDVIKS*