Scaffold Ga0102828_1000051

Overview

Basic Information

• Taxon OID: 3300007559
• Scaffold ID: Ga0102828_1000051
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22042
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004474	Metagenome / Metatranscriptome	436	Y
F012672	Metagenome / Metatranscriptome	278	N
F038677	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102828_100005112	F038677	N/A	MAGEFDFLEGFGISSTDVAQPENVYEQFLLTVGNQVTKDLSDYIKANANNSGGLAASVVYFPTGALSFEIQADDYFKFQDQGVNSVGANNHGSEFSFRYPGVSPRMANAIQQAYGVTTSHAYAISHSIKEHGIRPKKIIETVLSEEVLDRIANDLAEVTGLIFSIKFDKATQR*
Ga0102828_100005126	F004474	N/A	MNYLLSVENLKKLGLIHSNTDTKILAVAIKRSQDIQLQPALSTPLFKALLLRVQNNTWTQNYLDLMNDYVVPCLVAFVDYRCALLLNEKLTNKSVGRIQDENIQPNSDAETSALRDQLRKDAYFYKERLIVHLMADNGTKYPEYIETNSSPGHCSENMTKDRNGYTPINFII*
Ga0102828_10000519	F012672	N/A	LENYFNMAYSKEYIKNLELWSIEYIEECSSHKKETLSNKGEIIMVMDRHIPTIDYFLRIWIPIIRKEKGIVPSTWYEWLNCDDKLKSETIKKIDDLFKGLASDIVANEGKGIFYAKNRLGMHDRQQIETRTVDKFDFE*