Scaffold Ga0102817_1022625

Overview

Basic Information

• Taxon OID: 3300007555
• Scaffold ID: Ga0102817_1022625
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1394
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022649	Metagenome	213	Y
F048309	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102817_10226252	F022649	N/A	MLHIKNPNDITGMNFADGRFTLRDVETYYDKYRFAFKETGRWVYVDVYRQPKWDSEENKNMYRVDNGKFDNHWISAKWFGIIKNAKLTFNTALKDL*
Ga0102817_10226253	F048309	N/A	MLTIKNIDKVINMTCYGREIYHVSNHTNALGEHAYVFEFDLIDSGEGGWNKPKEVHLIRNKYNGTYRLFCMGLQLGTERRIEMSKIKDFPDLLVEISEVLRKTKTWWEHSNLQNK*