Scaffold Ga0102817_1002884

Overview

Basic Information

• Taxon OID: 3300007555
• Scaffold ID: Ga0102817_1002884
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4242
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F040392	Metagenome	162	N
F044802	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102817_10028842	F006772	GGAG	MPRTGRQIIMERLNKAIQTATTGDLQRAAIFLESAREVRAGCTKQRASSRRAQTNAWKKKTDSSITW*
Ga0102817_10028845	F044802	N/A	MSDSAALYRAQENLRMLETCPTWYDHLGQVEAAIAEEDRIYDIRVAAGWELDEGGWYAPCPETGELMPEWEWECAFGLSLPEDAK*
Ga0102817_10028848	F040392	N/A	VTEKQTRASIKTAHHYGGEFFSKLAEAALLADPRNRSRILDAFPEIVSKYGPGSAFYNEYL*