Scaffold Ga0102817_1000472

Overview

Basic Information

• Taxon OID: 3300007555
• Scaffold ID: Ga0102817_1000472
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11413
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (9.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007772	Metagenome / Metatranscriptome	345	Y
F015096	Metagenome / Metatranscriptome	257	Y
F045763	Metagenome / Metatranscriptome	152	Y
F085719	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102817_100047212	F007772	N/A	MSTFSYTLLKISRNIFKKDFNELTSEQRSEVMDIYYDFY*
Ga0102817_100047214	F085719	N/A	MTKTYRNIEYTYVLSETWNGIKFDNYRCNDRNLLDGLEISMFTKLSEQDMRDEIDHLIDQRQDLLQIQDLVHEARRDWYSNTYSGEYTGD*
Ga0102817_100047216	F045763	N/A	MSLFYWSEETISHFKFISSYLSKKQTIRKIELFVEMDCIPAEEETEEMLVQDLINVIYK*
Ga0102817_100047225	F015096	N/A	MNTLTQWQARRKELEDKYVELMLAKYPLLTDVTTNTQRKNGTRTFQLSHKKYGLCKFATYKSGMVRKIIRSRFNDLSCYQLNPQRPTTSYYMTLSDNSELNMSSYTGKQRVKITNGLARLVYLEKYLIKNYDLDSVQDVIEVDGVLYKRI*