Scaffold Ga0102877_1009618

Overview

Basic Information

• Taxon OID: 3300007548
• Scaffold ID: Ga0102877_1009618
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1548B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2874
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2319
  • Long. (^o): -123.8812

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009745	Metagenome / Metatranscriptome	313	Y
F092032	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102877_10096181	F009745	N/A	DSNVTQTLPKAVVLCDSARAPGDLPEGLGNYECSVRVTLFSNADDTTLAVHRERCAALSDCMKSLDLIQAAFAATSGAAICYDVTYRSEDEGIDERSWATSFAFDVLTCLEPQ*
Ga0102877_10096182	F092032	AGAAGG	VASLFVQSYSVSSGFNNTGTVVNESGLTVTARYDDRRSEITVEGVAKLTSVPQLGATLSFTAKTASAYPGGSASVSFSGVITKVDDRGSSKGFVSVSLTAESYEEITY*