Scaffold Ga0102875_1009471

Overview

Basic Information

• Taxon OID: 3300007547
• Scaffold ID: Ga0102875_1009471
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1547B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3283
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2314
  • Long. (^o): -123.8828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031764	Metagenome / Metatranscriptome	181	Y
F054858	Metagenome	139	N
F058818	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102875_10094712	F054858	AGGA	MNKKEQRMAITRAFRAKLVETQGNEFSFDEDDVMLIFDFIKDGVVYKGLEYHRGLGEVFNPVRRWAEGHGDNTKHFAYEAISDMLNDELEEIRAKVEEQAMFEKINKGLGIAK*
Ga0102875_10094716	F031764	N/A	MQKQIQETINKVSTSFPSLFSREDVIKLLADLNAEIQDEAPKQVIDKDVLLTTFRQMLSEKDWDNVVDKDDIELSMGYDNKVEVDSVTINEDYLIDEAVDALEALWDALEEAASED*
Ga0102875_10094719	F058818	N/A	MMEELLEKQTILSDIAGELYGELWIMNEKFWGSPTERELQEVTMSLLNLGHRVENTPEGDEAAKIVGKKLGLGLPPED*