Scaffold Ga0102861_1001916

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1001916
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4499
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023295	Metagenome / Metatranscriptome	210	Y
F035672	Metagenome / Metatranscriptome	171	Y
F048257	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_10019164	F035672	N/A	MLTDSIRDLSIGVGGPAGGLLIANVVPDPVLAHISITLGSLAALSVIIKNVLDIWSNRNK
Ga0102861_10019166	F023295	N/A	MLQSMGCQTRVILVPDGQPIMLAEPVRAKVYVFDSTGKLVPSSNRVVIPAGWYALPRK*
Ga0102861_10019168	F048257	N/A	MTAFPSSVAARKLIKGENYTESAYWVLKRTLLIRSGLSLAGEKKGIWKKSLYGSLAVQAFVTAWTATHMDEPVASLPSGEVAIQKDVLGILGTYLLRSAIVGTGLWLSGERRNLTRNTLISTAMIQASVLLWAKDQEV*