Scaffold Ga0102861_1001498

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1001498
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4973
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F021761	Metagenome / Metatranscriptome	217	Y
F076034	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_10014981	F010762	N/A	MNQTTLEIAFKEWWEASYGRPPGTHAVMTHVAFAEHMLRLFELMQSEAEL*
Ga0102861_10014985	F076034	GAGG	MREPLVVIAPKQTPVINRLHETMNQALAYAGAIRDNAQDDGQPIPLELVASFQETYQSIVNALAEAASV*
Ga0102861_10014988	F021761	N/A	MITNPWINRITVLVVMFAIYAAGYAGGRDQAVQAHYNHPACNTNLKP*