Scaffold Ga0102861_1000864

Overview

Basic Information

• Taxon OID: 3300007544
• Scaffold ID: Ga0102861_1000864
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6388
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F007025	Metagenome / Metatranscriptome	359	Y
F013505	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102861_100086414	F005382	AGG	MNKTSCIKQFIFNAGHSIVSVEFVKTDGSLRRIQFNPWDTKEIKGSGTATKKPSIIRCRDFAIARKEGQGAWRSFDCERVVSIKANGQTLAF*
Ga0102861_10008643	F007025	GAG	MDLEPSSGEAGMILIDFFNEECCKGTELIEGWYWYDDTDDDGVGGPYKSEEDAIKAASGGHGWQSKAVL*
Ga0102861_10008645	F013505	N/A	VTDCYEGADHGPLPDYCSFVRNKIMHKQIEGHKESSYLAKLEADRQAQHSGYGVRSIMLANGCYKWEAYGWERITELHRHYTSYAIFNNKGEAEQYLNNIIDG*