Scaffold Ga0102853_1002117

Overview

Basic Information

• Taxon OID: 3300007543
• Scaffold ID: Ga0102853_1002117
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2988
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022391	Metagenome	214	N
F027520	Metagenome	194	Y
F088530	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102853_10021172	F027520	GGAG	MNSALRNQILADRRRDRRNDIIASVIGWTVTIAGACIGACLFYAVTFTFLSIGL*
Ga0102853_10021178	F022391	N/A	MEYSEMTQGDYVKVSSTTEVEAKLKHLETRIRGWNYQSPLAIKLMPFTDPTSLSQDALFNIWCREIADQMKAKTPSADAEAWKLWLKHKFLGTYAVKVGRESIEGQVYATPKGKAKMAQFMHSVLVFADEKLRVRLSVPRNSEYVKVRENEQAKESKQKAKEEANHTAGSGKGSSATAKTRSSKGEQQIGLL*
Ga0102853_10021179	F088530	GAGG	MSLNYNKDLSKKEIQAAWDYALLSGAKHGVKMYRVFYDFMNAIGSNAAELYGLNYKKYYEPEFQDFFDGLELNRCRDRQSNGRLSCGFKMNDALSFVGARCLPLQLALLDKRVDLDEIVANVRHYKWVRKNHTGKKTKKRTNDSYRYVNLKSLTFKNQWSTVK*