Basic Information | |
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Taxon OID | 3300007543 Open in IMG/M |
Scaffold ID | Ga0102853_1000069 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 23834 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (44.19%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F039139 | Metagenome | 164 | N |
F039635 | Metagenome / Metatranscriptome | 163 | N |
F043397 | Metagenome | 156 | N |
F054860 | Metagenome | 139 | N |
F100477 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0102853_100006924 | F039635 | AGGA | MTEAQANKIKTRVEDFNILYAPITLRFQMFSTSETNWAVTITYNYTPEEWMTFVSLDSNYNHVNDRLSGFQFGIESVEAYQEEHGNLKFSHSGLPLG* |
Ga0102853_100006925 | F043397 | AGGAG | MPRYDVYIPFTCSYEGEIADEDYSTIVKADNEKDAIQKALDELSSEYVVKTLNSDEITVEEIPTFPSFDEWEEKYTALNNPHAREGEQGLGEIMFDTDGDEYQTVRGFDSSKIWTVRSTEYGLMLTAGFGVVDRFGYILSEQSFTEEDKDKAFIID* |
Ga0102853_100006927 | F100477 | N/A | MVNMKSIQLSSIKKKIGADNFTVIRDTIFKYSFDKPSKGMTLQRDRVVNSISDPQVKKSLENLTTNVDWFVIDVV* |
Ga0102853_100006931 | F054860 | AGAAG | LNITLKNARINYQNSEETVAFNALLCIDTKPFAEVSNDGKGGENRYRPLGDSMDWIYNHALVTQFREWCSIQPPVYDRQSGNTYKYDADIHVNDCLTQYIGNQSKVAVS* |
Ga0102853_100006939 | F039139 | GGTGG | MFLNSFEFTTEDITTILRAHDTDISIQELVEISDALDYDSIARTALMFDDIESQTQASLSHAEDLMIMDGLWITEPKRFQMP* |
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