Scaffold Ga0099848_1170839

Overview

Basic Information

• Taxon OID: 3300007541
• Scaffold ID: Ga0099848_1170839
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 794
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F020342	Metagenome / Metatranscriptome	224	Y
F074820	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099848_11708391	F074820	GAGG	MTVLAIEHTEITDTHVTVTAVVDEMRLLYRATHFEPEEWAPALCQTTIELDPEEPIPL
Ga0099848_11708392	F020342	N/A	MSVVTDNINLFDRINLAACARRRASENVLNSTRFEGEYDTARLWMKYRLVKYTNYSYIEDN*
Ga0099848_11708393	F001120	N/A	MTKDKSPLNFDKTIAGFNVTERGVQSYTKSVRLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLF*
Ga0099848_11708394	F001165	N/A	ATDYNRLQAMQLVARMKEAADKHGIGFIGGFVAPNGEKFVMTNMDDEDTQSLLPDNLK*