Scaffold Ga0099848_1000867

Overview

Basic Information

• Taxon OID: 3300007541
• Scaffold ID: Ga0099848_1000867
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14132
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (45.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002226	Metagenome / Metatranscriptome	580	Y
F034149	Metagenome / Metatranscriptome	175	Y
F101034	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099848_100086711	F034149	GGA	MTFSQGLVEQENEEPGFEIIHLSFRKRESSSLYGGPVNYYIGNIVFRLTDPDAKRRIEYYMQENEELRVAPDLELMEKYYEDLHFVFDDEEEEDEKGNKFTKLDIVNKHGIKDEDVFIRAYRRNMAPLHDFIQYNEKFDCYRMHEYFQDTPVVHGIIQYLQDMKDGKPNPSRTVYHEQFINTLENLCWWWD*
Ga0099848_100086718	F002226	GAGG	MSLISQTDRQMVIEALEYYIQRLKDDNCTQASINAFQTLLNWVELEYYKHEN*
Ga0099848_10008675	F101034	GGA	MKLKLPTLDSIVPTLVAFVAASIVGMTFTNYVICNFKVMTSLHYLYLVKAFNQSGAKPPSKCDDNTSESIQTLMSLLATIIALKADLKQKKENE*