Scaffold Ga0099849_1001873

Overview

Basic Information

• Taxon OID: 3300007539
• Scaffold ID: Ga0099849_1001873
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9840
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 38.9819
  • Long. (^o): -76.3716

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y
F047028	Metagenome	150	N
F080002	Metagenome	115	N
F085646	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099849_100187314	F047028	GGAG	MSDLSRGAAALVKNLFGGNETERMISAGVVRTILSDMTRLYFENRAALGEGILVFNPESPEASKYLTKTDLENDLAVAQEGMDEKAEALFSKIIRVIEKESDSDLALIAMVQANEICVHLVDPVEANKKIDELSNSLIL*
Ga0099849_100187315	F085646	N/A	METTREIKDIRDALNSIETSLQLLVAQKDGKVTSAFVSKKTVSQRLNIPSVTVDKLIHQGIVSRGDSGLIEGKHYCKVDPTERNSSKFLYDIHAITQAAWSNFTYV*
Ga0099849_100187316	F080002	N/A	VITTYTSTAYSGNSTNDLRRPCLWEHDFKIDNLPAWIYTDNQPPKDITDCEAKISSLEYTIRDIELQIEIRELELKTGSSRHSSAFDYEKWKVGALKAKQTHYYLLNAYTYWLIKSQRSALDSPAKLDKLIELLIEDPADFETKARALLN*
Ga0099849_10018733	F001215	N/A	MVDRPFLRGARINNGTTVVSDASNPDFGDLIQLVRVGDIPSEDGALVEDLFVVSAEGYPNNGGVRTAAFGVYVYAPNQSAPSTSTALLLGKFQVGLSGGTEGLIQRVELPATVAPTPRTGDTNLVYPIERGKMEALYLEKGYILCIGYLGNGPSAISGGLSPSGVSIIAQGGFY*
Ga0099849_10018734	F015724	AGGCGG	MARRNGSDDFGWHTHQPKKSKFGFSSFEGASSTHQLSSPMPFKRKFRPDFNLKDFSILFDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGIVGVGAALPGICYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYAIKSVTKTSDTVYAIELTSNFGPPISFFQGEVISDRFAADGTEKTSYNNYTVVGVGNGTTPLEPGFAPIYNSIFISLDTNNSWSVIDNETLSTPASLPTPGDYFTTEMRFGCNCPDYLAREDFNLYEYSLKRRYPYTLPQDLKPGQYDAGADYQSGRTSPSRDYPGFSRDFGFLYVKKILDLPSYSDGSKVYSDPNLIYFAPRWCKHIYASFWDLQNRFGNDVFSPAWLSQPSDEPIDDRYREEFEINLAKQTTFEKRQQKLRWWEKYSPSQNTVPNHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFKIDQYNPFAPPDPEATPKLDGGTYSNGVLVSGASLIYDGGQYSAGALIPYPSYPSLINGGTY*
Ga0099849_10018737	F008401	N/A	MDSARLLTIAQTAELLNCSAGFVRKRIMLTESNQPGGWPKGIFVNLQPNGVKSLYRINKDALEAYLNSGAEEATVEESATCAV*
Ga0099849_10018739	F023840	GAGG	VKDEHGHIRVGLTLEDDFTLQRLKNAAHALKGEDRDQYLWKTIFRFVCRERAFKSVMEETGVVVDTNIDIFEDSKDE*