Scaffold Ga0099851_1049835

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1049835
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1646
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014276	Metagenome / Metatranscriptome	264	Y
F016625	Metagenome / Metatranscriptome	246	Y
F040934	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_10498352	F040934	AGGAG	MIATIATVDILNLAIDQIDDNRVGDAKDTLITYRDKLQNEIDEFDKWAQTQSEIHTSLELEAEGK*
Ga0099851_10498355	F016625	N/A	MTVALAKAEETVFVKGKNFVTTEINDIKEYQKTQWQKGKEQNAKNWEKIKSLLGIN*
Ga0099851_10498356	F014276	AGG	MLHRISDLCKKIDGLKLQSDRLYNTKYNMPKTKERDAEVDYLIQDIQYICKLISEDKGRYDR*