Basic Information | |
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Taxon OID | 3300007538 Open in IMG/M |
Scaffold ID | Ga0099851_1002020 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8560 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (75.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Chesapeake Bay, USA | |||||||
Coordinates | Lat. (o) | 37.0516 | Long. (o) | -76.083 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006739 | Metagenome / Metatranscriptome | 365 | Y |
F008296 | Metagenome | 335 | Y |
F009064 | Metagenome / Metatranscriptome | 323 | Y |
F022871 | Metagenome | 212 | Y |
F046331 | Metagenome / Metatranscriptome | 151 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0099851_10020201 | F006739 | N/A | MQFPVYCFDIETDRYNVVSGYEGKALARLQLLEGVEENGDVVTWQDLTTGESRQVVIEQVSFTRMTPPDKRFDGFGGVIEITIRTV* |
Ga0099851_100202011 | F022871 | AGGAG | MSELENAWENDEDFWDFIGQNKRMVGLAISDGQGLDILSALRDIYTTIEESPDSAMRMLTLLGITIYASSIGEGKKFTDEIQITAAMEQFDTSIKEILDEESK* |
Ga0099851_100202016 | F046331 | AGGAG | VSHSEAPISITIKTAAGSLVTVRAENGTELDTTVAEGLDAITSATMELEKAIRGAIPTPMTVGQVASALGASISPIDNSTTTLGGRNCPHGKMTAIQGTGKDGSMYRGYFCSAPKGAFDKCKNVYLKTSDSAWNTFVLDQVK* |
Ga0099851_10020206 | F009064 | N/A | MSIIVNLSKDEVRVCTLLAVERWLTKFGSKDKPNYAQGKIDGKLEPEINANIRANVCEWAVAKQYNLGWNTPWYPNALHAKRYPISDVGNNLEVRSIRTQTSIAFWGKDRGKIIIGTKCLDAEYYSEVEIYGYINPDNFAKEQYYDSYINGWRVPITEFKEYDVKTI* |
Ga0099851_10020209 | F008296 | GGA | VSEAWVQEYDLLVSSLASEYFKRYPMLDAEDIRQTLWMWFVTHPVKYKEWSKLPDKDKEKLIAKSLRNAAITYCEKEKSAKSGYELADLYYYDASVVEAFLPSIIAGSYELPNKIKDLNFKFGKGEVSDGNNWLVLRSDIEKAFNQLAEAKQNILRIRFTADNYEWTTMAKELNTSADGARKRVERAINSLIRILGGWRTYTDVDTVENNTEDNDDRTES* |
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