Scaffold Ga0099851_1001144

Overview

Basic Information

• Taxon OID: 3300007538
• Scaffold ID: Ga0099851_1001144
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11221
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: Chesapeake Bay, USA
• Coordinates
  • Lat. (^o): 37.0516
  • Long. (^o): -76.083

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F002985	Metagenome / Metatranscriptome	515	Y
F003601	Metagenome / Metatranscriptome	477	Y
F015201	Metagenome / Metatranscriptome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099851_100114415	F003601	AGG	MTNDYTDDQLLAMAMANLGEYIHDNSPHYILIEEDPRNEDDYDSWTYGMEVLPHDHTWHSTSIDIESNEVK*
Ga0099851_100114417	F001807	GAGG	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATRLDPEEWAPALCQATIELDPEEPIPLDEDGFCAYLDELDPQWQLLDTSVGDPD*
Ga0099851_100114419	F001165	N/A	PMTDSNLPRIPDSVDLQRLQAMQLVAKMKESADKYGIGFIGGFVSPDGEKFVMTNMDDDDTQALLPDNLK*
Ga0099851_10011445	F002985	N/A	MSYVIACWRWGKPHAITANSKTNGFELIPLDSDVALNKIFSHPYRAGAQQILTWINSNDEDLSSKELTIEDEARFRK*
Ga0099851_10011447	F015201	GGAGG	MNKALIVYLVDKKKKMARTDVESKHAIKELKKQSAATF*