Scaffold Ga0105053_10139992

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105053_10139992

Scaffold Ga0105053_10139992

Overview

Basic Information
Taxon OID	3300007522 Open in IMG/M
Scaffold ID	Ga0105053_10139992 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2419
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Bonney
Coordinates	Lat. (^o)	-77.714	Long. (^o)	162.445	Alt. (m)		Depth (m)	83
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051734	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105053_101399923	F051734	N/A	MSRRRDQPTADDIRIPTFWDKALRRELVELYFDGMDIEMLGWHFDMKAIEIYRELISLLLGVTRLEEDPSVPRFRKRWEYLEDSELIRLYRRSVPVEQIAKQLGRDVPGVAMRLINSWWVTCPPKVAKTLGLNEDDVEITTEHGEETS*

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