Scaffold Ga0105055_10113647

Overview

Basic Information

• Taxon OID: 3300007519
• Scaffold ID: Ga0105055_10113647
• Source Dataset Name: Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2804
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Bonney
• Coordinates
  • Lat. (^o): -77.714
  • Long. (^o): 162.445
  • Depth (m): 83

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006056	Metagenome	382	N
F009733	Metagenome	313	N
F061563	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105055_101136471	F006056	N/A	SVIDLDLFEFNVTIAHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDGVARFTGAISDLNVSFISTTTPTAITTITAMGNLAKLGYTDVGATGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPTTALDAIGRIAQGTGATYYDDPTGRIIFEDYGNRGSTTFAGIWANQVGSWAEAEGTWADAPLFPPSFNLEAPGVIFAPTWSKTLTPLINDVMVTYGPDLSVTQTDSASITQYGRREYRLDTGIKTITDATTRAAGIMTAQANGLWNLGQISVLVDQLDPADTEQLLDLVSGALVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPGFTWSEVGAGAQWFEIVTQSDLVRL*
Ga0105055_101136473	F061563	AGGTGG	MITTQDAVMSLRPGIEWSMSGDDVAGITWHTPDVEPLTQAEVTKEVKRLEALAKTTEADRVAALKAARTFALSLGFTQAMLDVMYPQLTEGA*
Ga0105055_101136474	F009733	GGA	MSEIDQELHVDTVEAEPVKKKPTTPRSPKPTTETERARAIVRAKLKR*