Scaffold Ga0105050_10059164

Overview

Basic Information

• Taxon OID: 3300007516
• Scaffold ID: Ga0105050_10059164
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2713
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006056	Metagenome	382	N
F010818	Metagenome / Metatranscriptome	298	Y
F017930	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105050_100591641	F010818	AGG	VDFRDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATQPIQPGFRNGGDSLSDVSSKVDRIIEKLGL*
Ga0105050_100591642	F017930	GGAGG	MNIATVLEYVRPGEEWILDGDDYAGLTWLSDTPKPTEQEVADAYPLAVKAVADKEKARVKAISDARAFALSLGFTEAMLAVMYPQLTEAPSE*
Ga0105050_100591644	F006056	N/A	MTLQITLNGSVIDLALFDYSLAIAHGRSDVTSSPTASNAQLVLRGDTGPLLDLADTVAISFDGVARFTGAISDLNVSFISTTTPTAITTITAMGNLAKLGYTDVGVSGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPTTALDALGRIAQGTGATYYDDPTGRIIFEDYGNRGSTTFAGIWANQVGTWSEALGTWEDAPIFPPSFNLEAPGVIFAPTWSKTLTPLINDVTVTYGPDLSVTQTDSASITQYGRREYRLDTGIKTITDATTRAAGIMTAQANGLWNLGQISVLVDQLDETDTTALLNLVSGALVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVYPAFTWSEVGAGAQWFEIVTQSDLVRL*