Scaffold Ga0105050_10007903

Overview

Basic Information

• Taxon OID: 3300007516
• Scaffold ID: Ga0105050_10007903
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12486
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F012571	Metagenome	279	Y
F026542	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105050_1000790314	F026542	N/A	MNNQNLEKLQQLLTDFLGPQIQEVITSYAETKATGKYFIEIPDEDTIDLGLDVLASLVAKSSNVYGRAARFAGMARANYKIMEGKYKRKYKSSRVGKNEAEREAAAMEAAEDEYLALITCEAILSLAESMESAARISSESTRKLIDKVQSMQIASSREEKGRYLDSDFTTY*
Ga0105050_100079034	F012571	AGGAG	MPDRIQNPDDVIGVCSECKSDQPMKYMENSPFAQAGSPVPCKYCGGIVIIVYRETRNSSLNNSDNTRGI*
Ga0105050_100079036	F004789	GGAG	MIKNPSERWCWSYCGSCSRCGDKGRYAQCNGCSGRFDPKGVIAVNNDDFCDCKNGNLRWTPKSGGKSFIVKFKSNPFKGKVTYQKKSEDERDWDSYVRDMREKMDDPTWNPISITED*