Scaffold Ga0105050_10003486

Overview

Basic Information

• Taxon OID: 3300007516
• Scaffold ID: Ga0105050_10003486
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21708
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105050_1000348619	F020206	N/A	MALDIKKTNKTYQFSNLNVSEIIASKAVGEDILYRNHADNAAAKAEGLGNGDLYHTAGVLKIVYEV*
Ga0105050_100034864	F005243	N/A	MAKSKNPLDEKEPILTKEELNVRREEISAFYKDNIPHLEVQAEYEMLLATIEKSRAERLQAQMYMSQAYASQKEGGQVPVDSEEAKAFKEAMENAASQID*
Ga0105050_100034866	F004866	GAG	MAIVNKVDLKLQVDLNETIKYQILTYCFFENILISNSDLKCLMELSKQPKVELTKFCIFLTEQSIFKSPQSARNALAKAEKKNLIVKNGVNKKTISINKTINVQVDGLVLLDYKILGRESQET*
Ga0105050_100034867	F006666	N/A	VNPKKHKDFKAGIAEEVGVHQQVIDDFITFYYHKLRKKLSSIEYPRINVDGLGTFYLRKTKLENSIKKNKSALGNLTKRTYNGYAQSEYIQNNIEQMSKALVQMEADILAKKEFKAK*