NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105020_1053766

Scaffold Ga0105020_1053766


Overview

Basic Information
Taxon OID3300007514 Open in IMG/M
Scaffold IDGa0105020_1053766 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3399
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y
F048916Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0105020_10537663F036736GGAGVDKLNEMLIGALAVVGSFVTKRVFNNHDSLSNRISALEKTVVTKEDLIHIERNVEMILTHLINKGDTP*
Ga0105020_10537664F013820AGGAGMIAAIIGFIDKAMPGQKTYALMLIGIGMMVCQMLGYHHFPNEAWGLVGIGGAATWKMGHDRKKK*
Ga0105020_10537665F022754N/AVNELVIAIMLVIPPPYKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNNREMVFKSSETACYAVYDLGSPTFIRHPDHWYPVEPSKPLKMNIGE*
Ga0105020_10537666F002078AGGAGMDIASMFEGQGWFEIAGQVVLIFTAITGALPDKFVQKIPVLSTVWPIFNWLAGNVFNNINHPKGMAASADVEKEIDEAKAKVRARSGMPDVLDGM*
Ga0105020_10537667F048916GGAMGILSELAAPVANFGLGLYNADTYYSKECAWYEEVRLSQDTKQWLLQNNPPPIVSEDLAQVAKNNDIYKQVCDPKEPKD*
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