Scaffold Ga0105020_1021943

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105020_1021943

Scaffold Ga0105020_1021943

Overview

Basic Information
Taxon OID	3300007514 Open in IMG/M
Scaffold ID	Ga0105020_1021943 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6090
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	143
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039681	Metagenome	163	Y
F044724	Metagenome	154	N
F052647	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_10219432	F044724	GGA	LTSWDIATSTSIGTGVAQTEINGTQPLTKPTQAQTLIEVVPFMASTGALTAGQTYLTKCIIESNSINLLPKVFQVPAIMGGLGTFTNSLTPMLDAVECNTPLQLGATQQFRIYGQNFIANTVANRLGLGLHYSESVTNMKEKFYDMPTNETNTGTTATTVSGENLTINDGVFLEDIYPTVVSGVVTASQSYIGYMSVTSNDFGNSMPLNVPVQPISTALGTTTSVGMAKQPHFTNIHMPMKSSCLISHSYVQDEALTATGNFTITYGYTKA*
Ga0105020_10219433	F039681	AGGAG	MSTYEIGNPTKLRIKPVYDTGSYGHDLSLPLLLAQSTNLATLTPSTSSFHQTEHDSALPIDEVLSFISDSDKCELLHNGNDTDFDKTWLIQPDMTAWSYKIALNMGIGLKVSAYTSGNITVDNIHLTITEVGDGAGDIVIADLRIPTGASALSATGEQIIMFHADIMNKIRFNNNKPIKVRLQTESTKSGTATYQVGILPVYPMIPTAVPKEWLLSQVEIHLHASLDHAFPIWRDSNNDQRLDYSGCSPDGCNSALGEMGTV*
Ga0105020_10219434	F052647	GGA	MEILDFMPLIYVSVGLTATYFIGKLILGHMTQLKKVKRGIEVQKEKKSFENGLEDLLDNAPDMYVKVLQELEHLKANGADEKQMSSLQRKADLLKIAVENQEIINLAGKPLFRVLGKFVGNIGR*

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