Scaffold Ga0105020_1017908

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1017908
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6923
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007052	Metagenome / Metatranscriptome	359	Y
F042009	Metagenome / Metatranscriptome	159	Y
F083235	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_101790812	F083235	N/A	MGLIEGIVWFLPWLTEAWLWEKSVNIAIIGTVLFTKPRNWCVDYDSQGYDGVFYCL*
Ga0105020_101790819	F042009	GAG	MICTNCGIIINKGIDISHLWNNPEDTTYACSEKCAEEAPKNWLSDNPTTLYKNKYKQKGNYKSPNFEKG*
Ga0105020_10179088	F007052	GAG	MTKSKFVAKLMKKGKFLSSGTFESLEEARLWAMKEAKLLISDLEMLRSTNVGDIVVEIDKHFTEYEISTDELFKNSVRVI*