Scaffold Ga0105020_1016976

Overview

Basic Information

• Taxon OID: 3300007514
• Scaffold ID: Ga0105020_1016976
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7167
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007121	Metagenome / Metatranscriptome	357	Y
F011446	Metagenome / Metatranscriptome	291	Y
F025588	Metagenome / Metatranscriptome	201	N
F035477	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105020_101697612	F007121	N/A	MLKTFLLTIILLFATPANADWYIVLEKNLQEPGLDKLLKWVPEEVPRTVTFYFDTNEDGKYDIKIAYSLIEAFPCNKKSNCVSRIIDKGDHWLLPAPGINYYVIKRWIVYRYVDDKEWRGENKTQQWIFEYPLHEDWLKHRFEKLWPKE*
Ga0105020_10169765	F035477	GAGG	MKNFKDFTEAKMTRQHFQMIADVISGLDINISIKKDIAEKFADALSNTNPGFKRDYFIKAAK*
Ga0105020_10169767	F025588	GAGG	MAKTYSQFKKSLMNEDGMMNGDDGLENPATTVHYGPNDPEIDRTASVTMTVPKYRLSESEKGCNHTCSHWRDQTWCNEYKFKCDPDYICDSWNDSGI*
Ga0105020_10169768	F011446	AGGAG	MEAMILGWAQTQSWWGIATTVVVIANGVTMTLRDRYAEQIPILGKIWPILNWLSLNIANNKNDDK*