Basic Information | |
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Taxon OID | 3300007514 Open in IMG/M |
Scaffold ID | Ga0105020_1016976 Open in IMG/M |
Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um, replicate a |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Genomics Facility |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7167 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (64.71%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
Source Dataset Sampling Location | ||||||||
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Location Name | Cariaco Basin, Venezuela | |||||||
Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 143 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007121 | Metagenome / Metatranscriptome | 357 | Y |
F011446 | Metagenome / Metatranscriptome | 291 | Y |
F025588 | Metagenome / Metatranscriptome | 201 | N |
F035477 | Metagenome | 172 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0105020_101697612 | F007121 | N/A | MLKTFLLTIILLFATPANADWYIVLEKNLQEPGLDKLLKWVPEEVPRTVTFYFDTNEDGKYDIKIAYSLIEAFPCNKKSNCVSRIIDKGDHWLLPAPGINYYVIKRWIVYRYVDDKEWRGENKTQQWIFEYPLHEDWLKHRFEKLWPKE* |
Ga0105020_10169765 | F035477 | GAGG | MKNFKDFTEAKMTRQHFQMIADVISGLDINISIKKDIAEKFADALSNTNPGFKRDYFIKAAK* |
Ga0105020_10169767 | F025588 | GAGG | MAKTYSQFKKSLMNEDGMMNGDDGLENPATTVHYGPNDPEIDRTASVTMTVPKYRLSESEKGCNHTCSHWRDQTWCNEYKFKCDPDYICDSWNDSGI* |
Ga0105020_10169768 | F011446 | AGGAG | MEAMILGWAQTQSWWGIATTVVVIANGVTMTLRDRYAEQIPILGKIWPILNWLSLNIANNKNDDK* |
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