Scaffold Ga0105019_1000115

Overview

Basic Information

• Taxon OID: 3300007513
• Scaffold ID: Ga0105019_1000115
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 127168
• Total Scaffold Genes: 188
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 144 (76.60%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030885	Metagenome / Metatranscriptome	184	Y
F031657	Metagenome / Metatranscriptome	182	Y
F037425	Metagenome / Metatranscriptome	168	Y
F038861	Metagenome / Metatranscriptome	165	N
F039346	Metagenome / Metatranscriptome	164	Y
F044732	Metagenome / Metatranscriptome	154	Y
F049233	Metagenome / Metatranscriptome	147	N
F055206	Metagenome / Metatranscriptome	139	Y
F059362	Metagenome / Metatranscriptome	134	Y
F087020	Metagenome / Metatranscriptome	110	N
F090619	Metagenome / Metatranscriptome	108	Y
F090865	Metagenome	108	N
F096046	Metagenome / Metatranscriptome	105	Y
F099871	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105019_100011510	F038861	N/A	MSNNDWIKYETPHDGVGTHVSVWINEKMGLVKRTFDGDHCGPGVSKFKSKSDTFFKNEVYWLTHPLLFESKFLPELIEINGDTKTIIQKYYGPNLLDYLHDPKGFPVSNISEQILEMYTFFTEVGVNKLNGALSNMSANDGQLIAFDFKWARPAPKANAKEIKAFHTWFTKIDPDLVEKLIKMKTSKL*
Ga0105019_1000115142	F096046	N/A	MQGYFGVIPVTFCEWCYGSIYDMISQDVKDQVREQMNDEDREDMRHILSAVGIDYKRIEQAYETKQRFFNVTFNEPCGMSRK*
Ga0105019_1000115171	F090865	N/A	MNKIHIFSTARSGTHYLESLISGMRGIPIVPSPFEERDDENSPGSQELIDNINEFSAIDSMVFKTHPNWLYPIDTSVKQFKYCNVPNDDMLPLVQQFTQVADYTIGLIRLNIVEVALSFALAFHNWRLDPSEIGSFRPPYKNTTVTIPMDDFVEYCYKVLAIYEVMFAQKDIQCDKIIYYEDLAFDSTDARLTGLAPIHDIKSSVKQAKSKKITIANYDELYEYAIKFYSTHQWSMKITDGVITDINNFTNLIKKR*
Ga0105019_1000115173	F087020	N/A	MSYAEWVERYKGKQIDEVILEDHKVYLRQFKAWQIGNIERV*
Ga0105019_1000115181	F049233	GGTGG	VIKITEQKVLGDIGEKIVSNYMSKIGRTVEMSTDPFDSEKDMIVNGKNLEVKTQVPYCLDKSFTIRRNQLNKCLNADYFVIVQAPCEYLNEAAIWKVKKGFTYNTVKLKGGGERLAIPMNQPNVIKKMDIVGEDKALLRKYSTDFGG*
Ga0105019_1000115183	F059362	AGGAG	MTKDWYLSGVIKTGEPFLVEDNVKLRKTADIEGNIGKIIRVGTMNDVDFDYDIGPLISIDDVSLVIRSLQSGDLKAYDLNCTNSGLYKGKLEIV*
Ga0105019_1000115186	F090619	AGG	MDKYIMTKDQYIQIRTKVPIDSDGTVFKEFNANEKFRRQDISIMLKLLPLIEKYKLDFLPKIVEYNDKGYRYEFVEGKTIKEQVDGGMKVSQKMILEMKIAMDYIWKEFYDISMENRYNPLFRGNGFLYHGDPWLGNAIWNDDTRELKFIDLDSLSIAEFVPMTQLNNMFFQHLETLLMTQDNNKSTLGTWI*
Ga0105019_100011526	F030885	AGG	MKTIKNLTDPSISIINSSFTKGVALPYSVTMILNDTDNHKAFRKMMSEKFNQKDISIRISKYINDASIHFRNEDDVAEFLLIAGE*
Ga0105019_100011540	F039346	AGGA	MFTSFVITLIECLEIAFITLLISQTSVNKQLIYKYGGLGLIGGLLSAYYLHDMLENYEWLMYAILSSLFFYLFVKNKDIQKHIKEHVESITGASSIVLFSTAFFIYGRESFEIFSNLFLNPDASWSAAFCAVILAIWLYVFARDSKYTSYIFKFGYWAYLGFALWFGYEALEHLHIL*
Ga0105019_100011543	F037425	GGA	MKKEWDGLRKQYAGIIKNLLNNVDICNERYIKSGDEGYMVQRKEYIKEIEKIKTMIKKKERELGYY*
Ga0105019_100011552	F031657	N/A	MKKKKKLHFLYHIQDVGFKMLTESQARKYKAKHGNVIWNVHKTIDILPDLLEVK*
Ga0105019_10001156	F099871	GGAG	MGHFIKFTFTAFDKDFSVHVDDKDISTPVKMLNAKSRAMGKANREFLDKFLNEGIDPFPGWWSESSPTDFYWSTGNNFD*
Ga0105019_100011568	F044732	AGG	MTDHYFVQVMADNGEVLRWEALTKEQADFIFKQEVEKNGAENCTTGKTAGLDSNWVHRW*
Ga0105019_100011593	F055206	GAGG	MGMKFLYVDVDNRKVVGLFRNSNEEIIKLNMKELQILVQKEQYVLNSSILSELKEALKAMGQYRKANRPWYERLFW*