Basic Information | |
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Taxon OID | 3300007512 Open in IMG/M |
Scaffold ID | Ga0105016_1010461 Open in IMG/M |
Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Bigelow Laboratory Single Cell Genomics Center (SCGC) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10809 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
Source Dataset Sampling Location | ||||||||
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Location Name | Cariaco Basin, Venezuela | |||||||
Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 247 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003330 | Metagenome / Metatranscriptome | 493 | Y |
F023318 | Metagenome | 210 | Y |
F040060 | Metagenome | 162 | Y |
F047632 | Metagenome | 149 | Y |
F081218 | Metagenome / Metatranscriptome | 114 | Y |
F103058 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0105016_10104612 | F103058 | GAGG | MKMVIVFDTDDREGMKNTIKIVDQLAIDYLGRGLRETHKRNFGKIEFIKMLRSFAAEVSLATSDDSTDEDGTGLRFAKVFSEKVWERKENDGRW* |
Ga0105016_10104613 | F003330 | N/A | MRKRDAWDEPIPQVGDVVMSLPLEGDPGTVVKILQVNANGAWVVAVKWFTWDGGRTTEEYINELRIVSPV* |
Ga0105016_10104614 | F081218 | GAG | MRFQKGDWVKWVGGSYQNLKGIVIDTRLSFHDTPEVRVIWDDNSLGSLKQRSRGSWQRASCLKVLSSMEQDDENR* |
Ga0105016_10104615 | F047632 | GGA | MKIGDFVQWRDQTNYPGLCGIVTKTGIYTPDLELELDSPDIFVHWTNFPKEYAVGAGWEKRKDVELLSPGETE* |
Ga0105016_10104616 | F040060 | GGAG | MIRVGDLVHGHWFHRKIGVVTKIDDVAEMAFVQYSDRTNSWESLCNLRKAVK* |
Ga0105016_10104619 | F023318 | GGA | MTANNTNIFLVTNSSEDSIVAFSNIGTALEFVRDSHGDLNAEGSALMLETASGLVPATNKAVKDRNFTGRTLSFSATDAIGADLVSAAQSKLDGALQACELVGVDPSNVAMVANLRDALEVAQADASVSNLAEVVTFALAILPLHKRKHNKRS* |
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