Scaffold Ga0105016_1000026

Overview

Basic Information

• Taxon OID: 3300007512
• Scaffold ID: Ga0105016_1000026
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Bigelow Laboratory Single Cell Genomics Center (SCGC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 200819
• Total Scaffold Genes: 268
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (28.36%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F025852	Metagenome / Metatranscriptome	200	Y
F026718	Metagenome / Metatranscriptome	197	N
F028316	Metagenome / Metatranscriptome	192	Y
F033222	Metagenome / Metatranscriptome	178	Y
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y
F035326	Metagenome / Metatranscriptome	172	Y
F038415	Metagenome / Metatranscriptome	166	Y
F043614	Metagenome / Metatranscriptome	156	Y
F056154	Metagenome	138	Y
F070664	Metagenome	123	Y
F072246	Metagenome / Metatranscriptome	121	Y
F087296	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105016_1000026105	F043614	N/A	MKNITLTFERNGRTVWSDGDDHYTYYVHEPTMSKWEILWQYTQCGRHIGSIRKRIEDKWEYQGEVFRYERLEQGLKVEVDLLEADETYESVSRAMSTPPPVLT*
Ga0105016_1000026109	F087296	N/A	MITLTKAARVAQEVNEEEANVEYSEWVLKWQEIESDMTFNVPWKKLYERVGLTKTMSGPSTCRWTIAEKKFWAEYLRFVTEVYHYGGTLDELKRRITDQRIYNSRTDKTRRF*
Ga0105016_1000026181	F072246	GGA	MINKKPTKDYSQLARWLCLFEAVNIISEKADQIGRGKDCLKPIPINKYINERYPSVLKDVEYEFSNSHRTHRR*
Ga0105016_1000026183	F033600	N/A	MKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLDDIAKASPATYNQISADLVPFPGDHLIEQLGSAFTNISDATYLLNQLFENPSVHLDEKIVKSANLKLQKIQDLIKSVSEDLDHDETDS
Ga0105016_1000026184	F033590	N/A	MGKFENRFLSLLSEDEPGPPIPAPAIDAAPEDDKESFANALDEPGHAADFEDVIDQNPNEQEELKDLQEWITNIDDVLQYLNGGVNSVLGKLRNDNKVGTIFADVSDSTKNEILDVCERLAGLHQILKNLYIEKHK*
Ga0105016_100002619	F070664	N/A	MNKNETYYALATQQGSSVKLEIRETVKGNVVKTYRYPGTLEGQPVISGDTVNFTVAIGSYRKMIIQNIKTGKKVERRIQ*
Ga0105016_1000026191	F028316	N/A	MKKQMPKPKNFDNLLKSSINAAESVESMEEQDMSFINDYLAEHLKSFILLGYDLKGESVVIVSGKNPQDYDAIETLLRRVGNIDFFKDIQEQTNTNE*
Ga0105016_1000026192	F035326	N/A	MKNKVTTCGYFIKRLRDNGYKVNRIFSDYTSEDPRRWTIMINPEKAALFITCYVNYDWTGDFKFELHDGVLFKNLQLKTDSMEVIMTKLIEKNITPNEKTNAKT*
Ga0105016_1000026206	F025852	N/A	MDIITYIDSIGRTCFGELVEQTDSSLRVKAPAMIMVTPNDAANMKVDVMPLFFTEFSSGEAPIFKYLNTQYTEVEVTISDKILVHYNAKINVKEESNPEPAATTLSDENIPEVTLFEE*
Ga0105016_1000026224	F056154	N/A	MTDYDKLCERYMTRQVRSFYPRKFELSQEFIDAFKLEYSRLAESGQNKKTLLERIRKALSFHL*
Ga0105016_1000026263	F016734	N/A	MSEKIKKKHYDKALDKLDLTDSQRDALDHDVKRSLINLDTYQDTDTFSLQGYKLSRVMDDIVLAQYVDLSNDGRSVVRNGIHIPLSQVKRTWRLARVILVGPRCEYSSPGDVVCFPDDKGIKVDNLRVVGYENSLRDCIFLNEQRFFGICQDLEDDDNQSS*
Ga0105016_100002633	F038415	N/A	MKKVFNFIKTYKKEIGGLLRHAATIAGGVLIAKGSLDSETFHMILGAAASITGTGWSFANKISHKQEVKTAFATDPVTGDVTRHFNEETKAWEEKPEPKSKKKKKS*
Ga0105016_100002638	F033222	N/A	MAVLGLYDTTVMGYRVKVMPYVIGIFDDDDMIVGERIPNKIVRYLIEEGFCDTWLKDDIGIRVNIYRQGNADL*
Ga0105016_100002691	F026718	N/A	VTNLKKLEKLTHQLELHENDFIDYVTKADYSIVLVSEAGRIKWCNDYFQRSFDVNKEEIHNKGLNTILGIDVLTNNKRSRTITIHDTEHMVKVTDLRRDGKLIHKKVTLISHG*