Scaffold Ga0105000_1047512

Overview

Basic Information

• Taxon OID: 3300007511
• Scaffold ID: Ga0105000_1047512
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3963
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036024	Metagenome / Metatranscriptome	171	Y
F066274	Metagenome / Metatranscriptome	127	Y
F090490	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105000_10475122	F036024	N/A	MGMTTEYRMGRIGNEDTFLELNKAKEMCRKVVGNYISEVEEEDGKYAIDEYNWHIVTTETFEKDWFNDERLKKTDEIKAKYKNLTKKNRVLFFEINWN*
Ga0105000_10475123	F066274	N/A	MKIELTLDEIGWVKYALTRAASTMEGRDPDMTRKEERLLIRLARKIEKQEEENLK*
Ga0105000_10475126	F090490	N/A	MAHLITVTDLNDHELLFNLDTVVSMERGNNDNTIVTTRWSRTDIKETLEEVKNLAQKSSLEYQRIKNHAKN*