Scaffold Ga0105011_1088253

Overview

Basic Information

• Taxon OID: 3300007508
• Scaffold ID: Ga0105011_1088253
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1241
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F049294	Metagenome / Metatranscriptome	147	Y
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105011_10882532	F037175	N/A	MINFHTDDINERFVKSTIWNTLAHLKVYNIGRWLKKWDIHVWDLKDTNPKFFEHIQTTSGQKINPNMPSGVTGKFRMDLYLHDSRNIFKLRENSDRIQHEICHALLIGTPHFVSGVHDNINNRFTVNFWYWDRFKYRKFTLSIIDIRKYL*
Ga0105011_10882533	F049294	AGCAG	MAGNLRYYALGAYTGLVALWTGTGQIPLDQNTAIALLAPVAILIGADYAKHKND*
Ga0105011_10882534	F090244	N/A	MDVEARIFEKLDKIEERINDLCIRISAMETEYNSHIADMEKKQANKLRRRDYTLAVMAVGLTIIEVCRTLGVI*