Scaffold Ga0104999_1072185

Overview

Basic Information

• Taxon OID: 3300007504
• Scaffold ID: Ga0104999_1072185
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1448
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F024648	Metagenome	205	Y
F029601	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_10721851	F029601	N/A	SMMMVGDLVRLVAPEDKFHDAKGIVVRCVHGPTYKQGLHYEVQTFDGHTIIALDSELELLENEVEIPS*
Ga0104999_10721853	F024648	AGGA	MSNYHLYPGDMFRTNNGLGLIVKKSGGYFTYSTVGSDQRLACQTIEIKRFYRYCDDMSHGQILEVMLLPDRKYRRKRK*
Ga0104999_10721854	F005524	GAG	MDIGDKVQHFGTGSVGTVIDSSYEVETPFQQLCVQWEDDLAPHKDSWERREALSIIPHAPYDFTITD*