Basic Information | |
---|---|
Taxon OID | 3300007363 Open in IMG/M |
Scaffold ID | Ga0075458_10008541 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3283 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000847 | Metagenome / Metatranscriptome | 861 | N |
F001129 | Metagenome / Metatranscriptome | 768 | Y |
F004519 | Metagenome / Metatranscriptome | 434 | Y |
F032581 | Metagenome / Metatranscriptome | 179 | N |
F060863 | Metagenome / Metatranscriptome | 132 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0075458_100085411 | F032581 | N/A | MSMEEITRLTDKVKNDAEWYSERITRYLMENRNSYPLWNSPPSALDTIYPNATNYRTGMVLDRNRRMGISNLDYPYPYGQFGACNDC* |
Ga0075458_100085412 | F000847 | N/A | MSWIKIKQALLDLANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEDWTLLSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPS* |
Ga0075458_100085413 | F001129 | N/A | MLGQGGTMEFINGTVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGASISAGIVISGRNGGKITAVTPSVGSVIGFTFL* |
Ga0075458_100085414 | F060863 | N/A | MLIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFINSFQSYAFFVFYSNSWLPFMQRANTDSATAAEVRFINCLEVRMYNLLNA* |
Ga0075458_100085416 | F004519 | N/A | MATFRKYAFPKQADADKVLALCTGTTAAVDLGVLDGFICYDILWEGDAPKEATQYETWPEPCGVHSFLGWDEQYTEDYNANKPKSK* |
⦗Top⦘ |