Scaffold Ga0075458_10002421

Overview

Basic Information

• Taxon OID: 3300007363
• Scaffold ID: Ga0075458_10002421
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6148
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020667	Metagenome	222	Y
F021095	Metagenome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075458_100024216	F021095	N/A	VFNKMLYKVSGSLIAQPNFRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQRVVETLVSPTKPSLTQTGFVDHSGFYSGYRLDFTQEYGSTPVVTGATTTVSGVMAFAGNLEQLELADWSLTSYFRIGSSFTNVRPLTTPTAFTVYQGGKNFLAINGTKYETIVPTADWLVSARVAYKGVNYDFAVSPSLSGTTDFNIQRFACGPANLSGSIPALSGAVEGDSYTVRFISNAAGQSDTTTFTFGPCQRFNSIPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWMTDAESEWLIEMVRSGYVWLELNGTLVEAVVNANQYQFVTRRNDRLTQLQIELAVAYDNNIL*
Ga0075458_100024217	F020667	N/A	MSVTLIAYPTANFIDDLTAWNNFNTRATADGADAVEAACFDCLYLRFAGLNAMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPNNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPNSGHVSGTWTASGSASSGYVYGIVDAVGFSDLTQGNLVAGWWQLGPSIYVKKMVDLIFTEAGFRYSSNFFNSSLFNKLVIPYAAGTMPVNLSGSNIFAQATGNSASFIENANQTLAFPKDTPAPYYDNPGYWVASSSTFVAPALPTRWNVDVTLSVSGSFVQTINQFRCNMSIRNITNSEDIAVITGIPADINKQFTVRFENITVPANITANIGFVITADTFSLTQNFRVVSGATMQWTCLENPLGIGVLDMRTAIPADVKQSDLLQDLQKMFNLQFMPDSQDPKLLYIEPWKDFYSSGTVDWSQKSDENAEQILTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTSNFYGKGDKVVETLCGTLIPASFASDKILGRTWDLEGTRLSGSIKPLQTGYRIAQYNRITGQSPWFYWYGVEEDGFATVAATNALPFISHIDNPYAPSVDLAFGQPRLVYYNAVNASGSPFAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLSEFVATSTTPIANDPSALFNGPIDPDPVDPGYEPPINPELPSEG*