NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104761_1066418

Scaffold Ga0104761_1066418


Overview

Basic Information
Taxon OID3300007354 Open in IMG/M
Scaffold IDGa0104761_1066418 Open in IMG/M
Source Dataset NameDeep subsurface aquifer microbial community from Lead, South Dakota (SURF_DUSEL_B)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNational Aeronautics and Space Administration (NASA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)807
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → unclassified Peptococcaceae → Peptococcaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Aquifer → Sanford Underground Research Facility - Surf_Dusel_B

Source Dataset Sampling Location
Location NameLead, South Dakota, USA
CoordinatesLat. (o)-44.0341666Long. (o)-103.765833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021446Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0104761_10664182F021446AGGAGGMKTLSIALMAAFMLVLAATSTGQAQNAEYRDLDPTVGGKYIYRGADYIAQTLIVRGDKLSEINELTLIIQIKGSPDFRVTFPLLAKRQEGNKLILDYQWYPGGDTYEATIIGGTLINRKTKGYLAGIREELFIRE*

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