Scaffold Ga0070745_1004086

Overview

Basic Information

• Taxon OID: 3300007344
• Scaffold ID: Ga0070745_1004086
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7595
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F014804	Metagenome	260	Y
F018080	Metagenome	237	Y
F025613	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070745_10040861	F025613	N/A	MNKYKITNLRTGKNYFLNEEEKTNFFIKNKKQNYKEDNLTELKRIRYNKILDTIQLTTLFLAVVVTVV
Ga0070745_100408614	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNNGIKYKAALFLEERPVVEADLIMQGIGEIHYIDVKGVRSGGNTLRVNFKAHNSPKKKITHYLFIQPLNSLYARFCWFTHEQVSEWTVVMSTYTECYELEIPKNN*
Ga0070745_100408618	F018080	N/A	MEYLDIEIFNHFLKAYTYIIWNKKHLLGEIVEDDILKLLDKVQLIDFYHFDKTKFKVEKSKVEKYIKRDDK*
Ga0070745_100408619	F014804	GAG	MSNYDWIDEALDGEPSGITNTQWLIIESNIDQTSFTERMKSDILSRVNDLTELEAEEIITKIYENRYEKDTRKQWEKMCKDGVFGHRDF*