Scaffold Ga0102689_1799471

Overview

Basic Information

• Taxon OID: 3300007304
• Scaffold ID: Ga0102689_1799471
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaT (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1084
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F014823	Metagenome / Metatranscriptome	259	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102689_17994712	F007918	N/A	MSETTSEESDPFLKQELEEIKQELLSILANVESVTEAMSRAVLKEEDRREQFRTLCSLIDHSFGENIEMIEKRKDDLKELDPSLQAIACKLSTRMERLRDVAIKPDLKSMKIEMEKVLSQQRIEKFQTNPQQEEQRPQKG*
Ga0102689_17994713	F014823	N/A	MSKKSNKSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIENLQPMAVAEEKIDSPESLET*