NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070747_1339641

Scaffold Ga0070747_1339641


Overview

Basic Information
Taxon OID3300007276 Open in IMG/M
Scaffold IDGa0070747_1339641 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)514
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010332Metagenome / Metatranscriptome305N
F032664Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0070747_13396411F010332AGGAGMTDRFNTALEPLWLFLEKGMIVRRGVLFVAIWMTLDSYAWAKIYAYNPDPDPLIYAALLGVPSALLAAAL
Ga0070747_13396412F032664N/ASSLHYVGADGSLKSQATDLFILDNTASAKVWALVQSVEAVGGFGMYFDTHLGGEKQTLIHIDTRDERLLWMCPDEPKRRYVYYNNNPVYFLNLLSKELAKL*

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