Scaffold Ga0070747_1001660

Overview

Basic Information

• Taxon OID: 3300007276
• Scaffold ID: Ga0070747_1001660
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10776
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F043442	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070747_10016605	F007003	N/A	MLNGSNGKHLSGYYAWENFKDNWELNIIPTTKQDEFKSYYEHLNVETSDGIAWGVTGKKVIYMFVNDSKNPFILRSNIMPLGHELLHAVYQDGVGTHHITRKYDAPEGRAGTRGAAATVIVHDNWYGSKETIRFWIRHGFIWLPITVPYIPIKKAKEDYSI*
Ga0070747_10016607	F043442	GAG	LKIYFNGNNKAHMEALEECKVKNVVLSFKYSYANITKFRDRFDKLFVVAGTKTEPERYYELLKKHRGVYDHAIQYDVMYNMSDTLKHYKKEREMGIDWTIPVLQEHYLNHLSQLRPEPDTYVCLGEVHGREDTEDQIRKLPPNLKYHGLAKGRYTTKTRLFESLDTSGWVSAAMSKKCEVWNNNSTNFMFFGDKGKSMIPMLNHACEVHKEYLELINLNKQDLINGDYKALLKAPFALLYLPMCKQLNILDENFNL*