Scaffold Ga0099794_10002884

Overview

Basic Information

• Taxon OID: 3300007265
• Scaffold ID: Ga0099794_10002884
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6456
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003152	Metagenome / Metatranscriptome	504	Y
F009387	Metagenome / Metatranscriptome	318	N
F011654	Metagenome / Metatranscriptome	288	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099794_100028841	F011654	GGAGG	MPCALLGDRASGKTTFLGLLYAAQVKYGTGVQDDFRFHAPIGSLSLMSNVYEGMKDGRFPSATLKEEITELGFIFGYLRKVVGKLPYYIRNQNWVKPFSTLRFSAYDVSGEDIEEFIETGIASRPLIQRLLKSVVVVVLVDCSKMTTEIDTPG*
Ga0099794_100028842	F009387	N/A	MLRYDSTVAKLLVAFQTYKRQEYDRLKDSGVKADPPRIYPAFVLSKFDTLKDDVLARLGLHRGFPENKRARKEYAEALLRVFVPQTLSQIRGGKIAGVSMDKAAYFLSWVRTEQHEGMEPVGQPKIVRTGFAPEGGGEPDFAYDEYVEFIEHFRDIAHKIPDEVLEAEKFQAQALARSA*
Ga0099794_100028843	F003152	GGCGG	MGTAESKHGSTDGSFVEFDHWLYGAIPGTGYTTKAVSKGLDAGLYDQYLRGHYTPIRAATAQSYEDPIDLHMMHPVHGAREILLSRITRGPADEAGRPTFANHTVVARLEPLRSGQITLGSVFHALGEFDRKEPDVIGEMAPLQVPTRSEEERKVSFGLGIHRHLTFPAVETLATRIMAEATSRTLLLCRNTTPEARNATLDLVFELLCWGCGLPILTAISETPRSSAMNFFNLVVAPRGVRADSTWAILESSLTEPVLPRVMDRDDIYQKLTAIVRQSAALPVAR*