Scaffold Ga0103961_1357271

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103961_1357271

Scaffold Ga0103961_1357271

Overview

Basic Information
Taxon OID	3300007216 Open in IMG/M
Scaffold ID	Ga0103961_1357271 Open in IMG/M
Source Dataset Name	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2957
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.409238	Long. (^o)	103.907928	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021068	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103961_13572712	F021068	GAG	MNCGLQGTCMQPPDCTVYAVCIGDEKVRYEARSRIVPILGGAWAISEDKRKQFRKEGYVFDDEGAYLSSLNARWGELSCVHWMILNAEEKNIGNAQYRRNWIEPHQEWYAEDTLYLPEPAVFACSLEQQFYGGHFEFDAPAITRELADSGGWVFNREQIDAVWAQNLFIGCNMARGPKASYKQFMTILFHCLIPICEKHKGHFLSIEGYDKRAIAFLAERIITGLVLHRDKILPGMKIATAPIGFIN*

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