Basic Information | |
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Taxon OID | 3300007214 Open in IMG/M |
Scaffold ID | Ga0103959_1168824 Open in IMG/M |
Source Dataset Name | Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Singapore Centre on Environmental Life Sciences Engineering (SCELSE), The Singapore Centre on Environmental Life Sciences Engineering |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1043 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle) |
Source Dataset Sampling Location | ||||||||
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Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.409238 | Long. (o) | 103.907928 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000671 | Metagenome / Metatranscriptome | 945 | Y |
F011394 | Metagenome / Metatranscriptome | 291 | Y |
F011938 | Metagenome / Metatranscriptome | 285 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0103959_11688241 | F000671 | GAGG | MEKILCYSCNKTKNKLNAKRSSLLPINLLMCETCINSKLEPRWVIILAGRQNGMDSVKDFVVKKKYVGSDISASELMI* |
Ga0103959_11688242 | F011938 | GAGG | VKEYYDVVNVVFIHSMGTYGTVEVLGAFASKVKYEKDGIEYEELMENDEFSIIHEIVFTHIEEEN* |
Ga0103959_11688243 | F011394 | AGGAG | VSLESSKHFYDDKHFKHGINLWNGNPNKPVFYTKEMALKIRDIRKPVNDLQMDIVEYPDFLAIRLYEDNYMQYDGSAKTRIIDYVEKVKRLIESYGVRCELEGRPGERILRRS* |
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